Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_0238D-hydantoinase. (460 aa)    
Predicted Functional Partners:
CSCA_2139
Dihydropyrimidine dehydrogenase.
 
 0.992
CSCA_2457
Dihydroorotate dehydrogenase family protein.
 
 0.985
CSCA_2143
Allantoate amidohydrolase.
 
 
 0.972
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
 
 0.941
CSCA_0234
Selenate reductase YgfK.
 
 
 0.927
CSCA_2141
D-hydantoinase.
  
  
 
0.908
CSCA_0236
M20/DapE family protein YgeY.
 
  
 0.889
CSCA_0235
Selenium metabolism protein SsnA.
 
  
 0.865
CSCA_2142
Uracil permease.
 
  
 0.850
pyrR
Uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant; Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily.
  
 
 0.779
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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