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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0260Cystathionine gamma-synthase. (382 aa)    
Predicted Functional Partners:
CSCA_0261
Pyridoxal-5'-phosphate-dependent protein beta subunit.
 
 0.992
CSCA_3858
Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.
 
 0.970
CSCA_3667
Homocysteine S-methyltransferase.
  
 
 0.966
CSCA_2911
Aminotransferase class I and II.
 
 
 0.939
CSCA_2383
Aminotransferase class I and II.
 
 
 0.938
luxS
S-ribosylhomocysteinase LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family.
  
 
 0.936
CSCA_1815
O-acetylhomoserine/O-acetylserine sulfhydrylase.
 
 
0.933
CSCA_0240
O-acetylhomoserine/O-acetylserine sulfhydrylase.
 
 
0.929
CSCA_3669
O-acetylhomoserine/O-acetylserine sulfhydrylase.
 
 
0.928
CSCA_1816
Homocysteine S-methyltransferase.
  
 
 0.924
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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