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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0263Periplasmic binding protein/LacI transcriptional regulator. (384 aa)    
Predicted Functional Partners:
CSCA_0264
ABC transporter related protein.
 
 0.991
CSCA_0265
Sugar ABC transporter ATP-binding/membrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.963
mtnK
5-methylthioribose kinase; Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate.
 
    0.908
mtnA
Hypothetical protein; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
 0.905
CSCA_1182
PAS/PAC sensor hybrid histidine kinase.
   
 
 0.788
CSCA_4155
Histidine kinase.
   
 
 0.788
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
   
 
 0.775
CSCA_4197
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.764
rbsD
RbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.762
CSCA_1200
Monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.757
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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