Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0271Aminotransferase class I and II. (383 aa)    
Predicted Functional Partners:
CSCA_1658
Chorismate mutase.
 
  
 0.667
CSCA_0272
Hypothetical protein.
  
  
 0.625
CSCA_4803
Class II glutamine amidotransferase.
  
  
 0.547
CSCA_0270
Ribulose-bisphosphate carboxylase.
  
  
 0.464
CSCA_2261
Dihydrolipoamide dehydrogenase.
  
 
 0.437
mtnA
Hypothetical protein; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
  
 0.406
CSCA_5061
uroporphyrin-III C-methyltransferase.
  
  
 0.404
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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