Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_0349LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (292 aa)    
Predicted Functional Partners:
CSCA_5288
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.765
CSCA_1154
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.754
CSCA_1318
LysR substrate binding domain protein; Belongs to the LysR transcriptional regulatory family.
  
     0.754
CSCA_1840
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.714
CSCA_0660
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.702
CSCA_1653
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.674
CSCA_0350
Transporter, major facilitator family protein.
  
    0.568
CSCA_1650
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.490
CSCA_4803
Class II glutamine amidotransferase.
     
 0.465
CSCA_1935
Transcriptional regulator.
 
  
 0.453
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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