Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
CSCA_0419Putative transcription regulator, AraC family. (286 aa)    
Predicted Functional Partners:
CSCA_0018
Hypothetical protein.
 
 
 0.827
CSCA_2102
Transcriptional regulator, AraC family.
 
 
 0.696
CSCA_1907
Transcriptional regulator, AraC family.
 
 
0.685
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.665
CSCA_1886
Transcriptional regulator, AraC family.
 
   0.654
CSCA_2676
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.627
CSCA_0188
Cupin 2 conserved barrel domain protein.
 
 
0.606
CSCA_1935
Transcriptional regulator.
 
 
0.562
CSCA_3129
Protein of unknown function DUF1078 domain protein.
    
   0.554
CSCA_3130
Flagellar basal body rod protein.
    
   0.554
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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