Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0440ABC transporter, ATP-binding protein. (135 aa)    
Predicted Functional Partners:
CSCA_0441
ABC transporter related protein.
     0.990
CSCA_0442
ABC transporter, permease.
 
 
 0.969
CSCA_0446
Histidine kinase.
 
 
 0.863
CSCA_2213
Protein of unknown function DUF214.
 
 
 0.835
CSCA_1900
Protein of unknown function DUF214.
 
 
 0.815
CSCA_1803
Protein of unknown function DUF214.
 
 
 0.799
CSCA_1778
Protein of unknown function DUF214.
 
 
 0.793
CSCA_3787
Efflux ABC transporter, permease protein.
 
 
 0.764
CSCA_0935
Protein of unknown function DUF214.
 
 
 0.742
CSCA_3790
Histidine kinase.
 
 
 
 0.710
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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