Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0487Mannitol dehydrogenase domain protein. (537 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.996
uxaC-2
Glucuronate isomerase.
 
 
 0.987
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
 
 0.987
uxaC
Glucuronate isomerase.
 
 
 0.978
CSCA_0486
Transcriptional regulator, GntR family.
 
   
 0.821
CSCA_2072
Transcriptional regulator, GntR family.
 
   
 0.683
CSCA_0490
Oligogalacturonide transporter.
 
   
 0.681
CSCA_2593
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
  
  
 0.644
CSCA_3247
PTS system, fructose family, IIA component.
  
  
 0.644
CSCA_0007
Altronate dehydratase.
 
  
 0.579
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.