Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CSCA_0490Oligogalacturonide transporter. (504 aa)    
Predicted Functional Partners:
uxaC-2
Glucuronate isomerase.
 
   
 0.831
CSCA_0295
Sugar (Glycoside-Pentoside-Hexuronide) transporter.
  
     0.727
CSCA_0487
Mannitol dehydrogenase domain protein.
 
   
 0.681
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.675
CSCA_0486
Transcriptional regulator, GntR family.
 
   
 0.580
uxaC
Glucuronate isomerase.
 
   
 0.561
CSCA_0485
Phage prohead protease, HK97 family.
 
  
 0.510
CSCA_0491
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
     
 0.494
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.449
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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