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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0551Hypothetical protein. (241 aa)    
Predicted Functional Partners:
CSCA_0549
Cobalt transport protein.
 
 
 0.985
CSCA_0550
ABC transporter related protein.
     0.961
CSCA_0552
Hypothetical protein.
 
   
 0.928
CSCA_0553
Hypothetical protein.
 
     0.908
CSCA_0548
Surface/cell-adhesion protein.
 
   
 0.852
ecfT
Cobalt transport protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.728
CSCA_1556
Cobalt transport protein.
  
 
 0.721
CSCA_0561
Cobalt ABC transporter, inner membrane subunit CbiQ.
  
 
 0.681
CSCA_5053
Cobalt transport protein.
  
 
 0.681
CSCA_0558
Surface/cell-adhesion protein.
 
   
 0.569
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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