Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_0618Arsenical-resistance protein. (348 aa)    
Predicted Functional Partners:
CSCA_0619
Transcriptional regulator, ArsR family.
 
  
 0.896
CSCA_0621
Arsenite-activated ATPase ArsA.
     
 0.667
CSCA_0620
Arsenical resistance operon trans-acting repressor ArsD.
     
 0.629
CSCA_0362
Hypothetical protein.
  
  
 0.585
CSCA_0721
Hypothetical protein.
  
  
 0.585
CSCA_3926
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.585
CSCA_0617
Permease.
  
  
 0.563
CSCA_0615
Transcriptional regulator, ArsR family.
 
  
 0.557
CSCA_2676
Pyridine nucleotide-disulfide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
     
 0.555
CSCA_0500
Cytochrome c biogenesis protein transmembrane region.
     
 0.472
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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