STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0628Two-component response regulator. (226 aa)    
Predicted Functional Partners:
CSCA_0629
Two component sensor histidine kinase.
 
 0.996
CSCA_0155
Histidine kinase.
 
 
 0.818
CSCA_2227
Hypothetical protein.
 
 0.802
CSCA_2618
Sensor histidine kinase.
 
 
 0.791
CSCA_0185
His Kinase A (phosphoacceptor) domain protein.
 
 
 0.782
CSCA_1122
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
 
 0.778
CSCA_1760
Multi-sensor hybrid histidine kinase.
  
 
 0.776
CSCA_2549
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
 
 0.770
CSCA_0317
Histidine kinase.
 
 
 0.768
CSCA_5052
PAS/PAC sensor signal transduction histidine kinase.
 
 0.753
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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