Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_0635Ferritin Dps family protein; Iron-storage protein. (168 aa)    
Predicted Functional Partners:
CSCA_4512
Desulfoferrodoxin.
 
  
 0.831
CSCA_3276
Rubrerythrin.
  
  
 0.643
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
   0.620
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
  
    0.600
CSCA_0636
Natural resistance-associated macrophage protein.
     
 0.576
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
   0.575
CSCA_0819
Flavin reductase domain protein FMN-binding.
  
    0.442
CSCA_1846
acyl-CoA dehydrogenase domain protein.
  
  
 0.431
rplR
Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
  
    0.411
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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