Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSCA_0660Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
CSCA_1699
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.761
CSCA_0349
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.702
CSCA_0658
NADH:flavin oxidoreductase/NADH oxidase.
 
  
 0.594
CSCA_0659
Iron-containing alcohol dehydrogenase.
 
  
 0.575
CSCA_4803
Class II glutamine amidotransferase.
     
 0.465
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.447
CSCA_2917
Transcriptional regulator, Crp/Fnr family.
   
 
 0.437
CSCA_1907
Transcriptional regulator, AraC family.
  
  
 0.429
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.429
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.428
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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