Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0678CRISPR-associated RAMP protein, Cmr1 family. (371 aa)    
Predicted Functional Partners:
CSCA_0681
CRISPR-associated RAMP protein, Cmr6 family.
 
 
 
 0.985
CSCA_0679
CRISPR-associated RAMP protein, Cmr4 family.
 
 
 
 0.984
CSCA_0682
Metallopeptidase, M24 family.
 
 
 
 0.981
CSCA_0683
CRISPR-associated protein Cmr3.
 
 
   0.980
CSCA_0685
Cmr4 family CRISPR-associated RAMP protein.
 
 
 
 0.979
CSCA_0686
CRISPR-associated protein, Cmr5 family.
 
 
 
 0.977
CSCA_0680
Cmr5 family CRISPR-associated protein.
       0.773
CSCA_0684
Hypothetical protein.
       0.730
cas1
CRISPR-associated Cas1 family protein; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.419
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.