Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0722Hypothetical protein. (422 aa)    
Predicted Functional Partners:
CSCA_0104
Transcriptional regulator.
  
  
 0.681
CSCA_0721
Hypothetical protein.
 
   
 0.679
CSCA_0105
Hypothetical protein.
  
  
 0.669
CSCA_0106
Hypothetical protein.
  
  
 0.658
CSCA_1588
Transcriptional regulator, PadR-like family.
  
     0.529
CSCA_0720
Hypothetical protein.
       0.499
CSCA_3434
Hypothetical protein.
  
   
 0.480
CSCA_4867
GTP diphosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
    0.469
CSCA_4170
Malonyl CoA-acyl carrier protein transacylase.
  
  
 0.455
CSCA_2698
Phage protein.
   
  
 0.443
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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