Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_0766Beta-lactamase domain protein. (299 aa)    
Predicted Functional Partners:
CSCA_0161
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 0.922
CSCA_0067
Hypothetical protein.
 
  
  0.920
CSCA_0701
Glyoxalase/bleomycin resistance protein/dioxygenase.
  
 0.913
CSCA_2484
Electron transfer flavoprotein alpha/beta-subunit.
  
  0.913
CSCA_2485
Electron transfer flavoprotein alpha/beta-subunit.
  
 
 0.906
CSCA_0591
FAD linked oxidase domain protein.
    
 0.905
CSCA_2483
FAD linked oxidase domain protein.
    
 0.905
CSCA_2486
Hypothetical protein.
     
 0.905
CSCA_4869
Beta-lactamase domain protein.
  
  
 
0.905
CSCA_0186
Hypothetical protein.
     
 0.904
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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