Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0782Hypothetical protein. (170 aa)    
Predicted Functional Partners:
CSCA_2946
Accessory gene regulator B.
  
     0.629
CSCA_0129
Membrane protein of unknown function.
 
     0.598
CSCA_2179
Accessory gene regulator B.
  
     0.593
CSCA_0781
PHP domain-containing protein.
 
     0.568
CSCA_0392
Pentapeptide repeat protein.
  
     0.550
CSCA_4070
Hypothetical protein.
  
     0.547
CSCA_0783
Xanthine dehydrogenase family protein, molybdopterin-binding subunit.
       0.535
CSCA_0784
Xanthine dehydrogenase family protein FAD-binding subunit.
       0.535
CSCA_0785
Xanthine dehydrogenase family protein, iron-sulfur binding protein.
       0.535
CSCA_3997
Hydrolase.
   
    0.508
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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