Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0860Cupin 2 conserved barrel domain protein. (183 aa)    
Predicted Functional Partners:
CSCA_4597
Transcriptional regulator, XRE family.
 
 
 0.838
CSCA_2727
Transcriptional regulator, XRE family.
  
     0.741
CSCA_0861
Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.537
CSCA_3751
Helix-turn-helix domain-containing protein.
  
     0.525
CSCA_3607
Nucleotidyl transferase.
  
  
 0.518
CSCA_1999
Transcriptional regulator, XRE family.
 
 
0.513
CSCA_1274
Transcriptional regulator, XRE family.
 
 
0.501
CSCA_0419
Putative transcription regulator, AraC family.
 
 
 0.495
CSCA_2564
Transcriptional regulator, XRE family.
 
 
0.467
CSCA_0864
Transcriptional regulator, XRE family.
 
   
0.466
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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