Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_0892Transcriptional regulator, TetR family. (215 aa)    
Predicted Functional Partners:
CSCA_0894
CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.755
CSCA_0893
Flavodoxin.
  
    0.752
CSCA_5327
SH3 type 3 domain protein.
  
   
 0.688
CSCA_1929
Hypothetical protein.
  
     0.665
CSCA_0895
Arsenate reductase; Belongs to the ArsC family.
 
   
 0.620
CSCA_1928
Hypothetical protein.
  
   
 0.617
CSCA_2419
Hypothetical protein.
  
     0.610
CSCA_3562
Germination protein, Ger(x)C family.
  
     0.541
CSCA_0482
Hypothetical protein.
  
     0.535
CSCA_1330
Hypothetical protein.
  
     0.522
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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