Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0897ABC transporter, permease protein. (558 aa)    
Predicted Functional Partners:
CSCA_0898
Hypothetical protein.
 
 
 0.998
CSCA_0896
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.995
potA
ABC-type spermidine/putrescine transport systems, ATPase components; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
 0.878
CSCA_1145
ABC transporter related protein; Belongs to the ABC transporter superfamily.
 
 
 0.828
CSCA_0468
Spermidine/putrescine import ATP-binding protein PotA.
 
 
 0.813
CSCA_2081
ABC transporter substrate-binding protein.
  
   
 0.468
CSCA_1144
Binding-protein-dependent transport systems inner membrane component.
 
     0.417
CSCA_0467
Putative membrane protein.
 
    0.403
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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