Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0898Hypothetical protein. (345 aa)    
Predicted Functional Partners:
CSCA_0897
ABC transporter, permease protein.
 
 
 0.998
CSCA_0896
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.982
CSCA_1197
Putative sensor with HAMP domain.
   
   0.719
CSCA_2313
Putative sensor with HAMP domain.
   
   0.716
CSCA_0430
Glycerol-3-phosphate transporter.
  
  
 0.647
CSCA_0431
Phosphoglycerate transporter.
  
  
 0.647
CSCA_4037
Putative chemotaxis protein MotB.
   
   0.576
CSCA_3142
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.567
CSCA_5307
Signal transduction histidine kinase, LytS.
   
   0.551
CSCA_2154
Sensor histidine kinase-like protein.
   
   0.549
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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