STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0901GerA spore germination protein. (496 aa)    
Predicted Functional Partners:
CSCA_0902
GerKB3.
 
  
 0.907
CSCA_0903
GerKC4.
 
  
 0.885
CSCA_2479
Stage V sporulation protein AD.
  
  
 0.804
CSCA_2480
Stage V sporulation protein AC.
  
  
 0.791
CSCA_2478
Stage V sporulation protein AE.
  
  
 0.785
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.782
CSCA_4447
Hypothetical protein.
  
  
 0.780
CSCA_3944
Stage II sporulation protein R.
 
    0.778
CSCA_3945
Germination protein, Ger(x)C family.
 
  
 0.777
CSCA_1059
Spore germination protein.
 
  
 0.776
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.