Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0938Two component transcriptional regulator, winged helix family. (229 aa)    
Predicted Functional Partners:
CSCA_0937
Histidine kinase.
 
 
 0.954
CSCA_0935
Protein of unknown function DUF214.
 
   
 0.859
CSCA_1898
Histidine kinase.
 
 
 0.849
CSCA_1026
Sensory transduction histidine kinase.
 
 
 0.845
CSCA_2216
Two component sensor histidine kinase.
 
 
 0.844
CSCA_2276
Histidine kinase.
 
 
 0.843
CSCA_3790
Histidine kinase.
 
 
 0.843
CSCA_0446
Histidine kinase.
 
 
 0.837
CSCA_1760
Multi-sensor hybrid histidine kinase.
  
 
 0.776
CSCA_1778
Protein of unknown function DUF214.
 
   
 0.741
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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