Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0939Hypothetical protein. (124 aa)    
Predicted Functional Partners:
CSCA_1576
NADH ubiquinone oxidoreductase 20 kDa subunit.
    
   0.564
CSCA_0930
FeoA family protein.
 
  
 0.555
CSCA_0940
Transcriptional regulator, AraC family.
  
  
 0.552
CSCA_2802
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.480
CSCA_5246
Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.480
CSCA_5080
ABC-3 protein.
  
  
 0.472
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.442
CSCA_0938
Two component transcriptional regulator, winged helix family.
  
  
 0.439
CSCA_3830
RNA polymerase sigma-54 factor.
   
    0.429
CSCA_4652
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.427
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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