STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0941ABC transporter permease/ATP-binding protein. (588 aa)    
Predicted Functional Partners:
CSCA_0942
ABC transporter, permease/ATP-binding protein.
 
  
 
0.985
CSCA_0940
Transcriptional regulator, AraC family.
 
  
 0.625
CSCA_0947
Putative transcriptional regulator, AraC family.
 
  
 0.625
CSCA_2557
Microtubule-severing ATPase; Belongs to the AAA ATPase family.
 
 
 0.580
CSCA_0250
Polar amino acid ABC transporter ATP-binding protein.
 
     
0.576
CSCA_0952
Cation transporter HAD ATPase.
 
   
 0.502
ecfA-2
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
     
0.496
CSCA_5252
ABC transporter, ATP-binding protein.
 
 
 
0.486
CSCA_0943
Surface-layer protein.
       0.472
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.461
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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