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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0952Cation transporter HAD ATPase. (693 aa)    
Predicted Functional Partners:
CSCA_1065
Heavy metal transporter.
  
 
 0.867
CSCA_0130
Transcriptional regulator, ArsR family.
 
  
 0.852
CSCA_1048
Copper ion binding protein.
 
 
 0.807
CSCA_3219
Heavy metal transport/detoxification protein.
  
 
 0.778
CSCA_0131
Cadmium-translocating P-type ATPase.
 
 
0.766
CSCA_1047
Copper-translocating P-type ATPase.
 
 
0.758
CSCA_5159
Putative heavy metal-binding protein.
  
 
 0.704
CSCA_4040
Hypothetical protein.
  
 
 0.687
CSCA_0615
Transcriptional regulator, ArsR family.
  
  
 0.648
CSCA_0953
Methyltransferase type 11.
 
   
 0.562
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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