Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0962Tetratricopeptide domain protein. (310 aa)    
Predicted Functional Partners:
CSCA_0963
Hypothetical protein.
 
     0.720
CSCA_0961
TPR repeat-containing protein.
  
 
 0.629
CSCA_1307
Hypothetical protein.
 
  
 0.596
CSCA_0960
Hypothetical protein.
  
 
 0.552
CSCA_0959
Hypothetical protein.
       0.461
CSCA_4405
FHA domain containing protein.
  
  
 0.460
CSCA_1929
Hypothetical protein.
 
     0.456
CSCA_4340
Tetratricopeptide repeat protein.
 
  
 0.456
CSCA_1830
Hypothetical protein.
  
 
 0.427
CSCA_2215
Peptidase S41.
  
 
 0.427
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.