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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_0983Alpha/beta hydrolase fold-3 domain protein. (344 aa)    
Predicted Functional Partners:
CSCA_4946
NADH dehydrogenase (quinone).
   
   0.757
CSCA_0811
NADH dehydrogenase (quinone).
  
   0.752
CSCA_2650
NADH dehydrogenase (quinone).
  
   0.752
CSCA_1643
Alpha/beta hydrolase fold protein.
  
     0.746
CSCA_4947
Ferredoxin.
   
 
 0.578
CSCA_3627
AMP-binding enzyme.
  
 
 0.565
CSCA_0984
Catalase.
       0.517
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.516
CSCA_3179
Phosphopantetheine-binding.
   
 
 0.516
CSCA_3628
Acp2.
   
 
 0.516
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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