Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1000Leucine-rich repeat protein. (683 aa)    
Predicted Functional Partners:
CSCA_1849
Ankyrin.
  
   
 0.498
CSCA_0502
Diguanylate cyclase (GGDEF) domain protein.
 
  
 0.496
CSCA_2455
Peptidase S8 and S53 subtilisin kexin sedolisin; Belongs to the peptidase S8 family.
 
 
 0.476
CSCA_1001
Protein of unknown function DUF182.
       0.432
CSCA_1304
TPR repeat-containing protein.
 
   
 0.429
CSCA_0547
Ig domain protein group 2 domain protein.
  
  
 0.424
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
      
 0.403
CSCA_5258
KWG Leptospira repeat protein.
  
  
 0.402
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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