STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1016NAD(P)H dehydrogenase (quinone). (184 aa)    
Predicted Functional Partners:
CSCA_5168
NADPH-dependent FMN reductase.
 
     0.776
CSCA_3283
NADPH-dependent FMN reductase.
  
     0.739
CSCA_3809
NADPH-dependent FMN reductase.
 
     0.729
CSCA_0726
Acetyltransferase.
  
     0.725
CSCA_0374
Flavin reductase.
 
     0.722
CSCA_0062
NADPH-dependent FMN reductase.
  
     0.709
CSCA_1017
Hypothetical protein.
       0.674
CSCA_0911
NADPH-dependent FMN reductase.
  
     0.510
CSCA_5025
NADPH-dependent FMN reductase.
  
     0.509
CSCA_1015
Hypothetical protein.
       0.503
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.