Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1017Hypothetical protein. (222 aa)    
Predicted Functional Partners:
CSCA_4748
B3/4 domain protein.
  
     0.700
CSCA_1016
NAD(P)H dehydrogenase (quinone).
       0.674
CSCA_0664
Hypothetical protein.
  
     0.630
CSCA_5167
Hypothetical protein.
  
     0.553
CSCA_1018
Transcriptional regulator, GntR family with aminotransferase domain.
       0.531
CSCA_4434
Lysine exporter protein (LYSE/YGGA).
  
    0.520
CSCA_3274
Hypothetical protein.
 
     0.515
CSCA_1015
Hypothetical protein.
       0.436
CSCA_0731
Alpha/beta hydrolase fold protein.
  
     0.434
CSCA_3286
Hypothetical protein.
  
     0.409
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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