Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
araBL-ribulokinase. (556 aa)    
Predicted Functional Partners:
CSCA_1190
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.996
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.995
CSCA_3593
L-ribulose-5-phosphate 4-epimerase.
 
 
 0.985
CSCA_2833
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
   
 0.906
CSCA_0009
PfkB domain protein.
  
 
 0.823
CSCA_0485
Phage prohead protease, HK97 family.
  
 
 0.823
CSCA_3925
Sugar-phosphate isomerase, RpiB/LacA/LacB family.
    
  0.811
CSCA_1188
Regulatory protein GntR HTH.
 
   
 0.581
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde.
  
  
 0.540
CSCA_1191
Two component transcriptional regulator, AraC family.
 
     0.512
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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