Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_1223Protein-glutamine gamma-glutamyltransferase. (255 aa)    
Predicted Functional Partners:
CSCA_1224
Hypothetical protein.
       0.829
CSCA_3577
Cell wall hydrolase; cortex lytic enzyme, putative.
 
   
 0.635
CSCA_3578
Hypothetical protein.
  
     0.623
CSCA_1061
Spore germination protein KB.
  
   
 0.592
CSCA_1062
Spore germination protein KB.
  
   
 0.583
CSCA_3246
Protein of unknown function UPF0180.
  
     0.569
CSCA_1059
Spore germination protein.
  
   
 0.551
CSCA_3560
Spore germination protein.
  
   
 0.490
CSCA_1225
Triple helix repeat-containing collagen.
  
    0.482
CSCA_3942
Germination protein YpeB.
  
   
 0.480
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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