Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1226Hypothetical protein; Gp4. (155 aa)    
Predicted Functional Partners:
CSCA_1225
Triple helix repeat-containing collagen.
 
 
 
0.728
CSCA_4800
Hypothetical protein.
  
     0.632
CSCA_4343
Cell wall hydrolase SleB.
  
    0.611
CSCA_2192
Conserved unknown protein.
 
   
 0.593
CSCA_4706
Glycosyl transferase family 2.
 
   
 0.535
CSCA_1040
Hypothetical protein.
  
     0.419
CSCA_2343
Fibronectin type III domain protein.
 
    0.402
CSCA_3545
Hypothetical protein.
  
     0.402
CSCA_1223
Protein-glutamine gamma-glutamyltransferase.
       0.401
CSCA_1224
Hypothetical protein.
       0.401
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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