Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1288Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family. (318 aa)    
Predicted Functional Partners:
CSCA_4817
Integrase family protein; Belongs to the 'phage' integrase family.
  
     0.753
CSCA_4106
Phage integrase, N-terminal SAM domain protein; Belongs to the 'phage' integrase family.
  
     0.748
CSCA_3020
Integrase family protein.
  
     0.745
CSCA_3740
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.742
CSCA_1392
Integrase/recombinase (XerC/CodV family).
  
     0.737
CSCA_2447
Site-specific recombinase, phage integrase family.
  
     0.731
CSCA_3725
Hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.727
CSCA_3057
DNA integration/recombination protein; Belongs to the 'phage' integrase family.
  
     0.717
CSCA_4913
Putative phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.698
CSCA_1289
Non-specific serine/threonine protein kinase.
  
    0.549
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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