Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1320PTS system transcriptional activator. (915 aa)    
Predicted Functional Partners:
CSCA_3830
RNA polymerase sigma-54 factor.
 
 
 
 0.927
CSCA_1323
Phosphotransferase system PTS lactose/cellobiose-specific IIA subunit.
 
   
 0.883
CSCA_1321
Phosphotransferase system lactose/cellobiose-specific IIB subunit.
 
   
 0.833
CSCA_1322
PTS system, lactose/cellobiose family IIC subunit; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
     0.784
CSCA_0207
PspA/IM30 family protein.
   
 
 0.704
CSCA_4027
Phage shock protein A, PspA.
   
 
 0.704
CSCA_4697
Hypothetical protein.
   
 
 0.704
CSCA_4701
Hypothetical protein.
   
 
 0.704
CSCA_4685
Transcriptional antiterminator, BglG.
 
   
 0.629
CSCA_0097
Transcription antiterminator.
 
   
 0.627
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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