Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
CSCA_1333Radical SAM domain protein. (573 aa)    
Predicted Functional Partners:
CSCA_1332
Hypothetical protein.
       0.829
CSCA_4693
Single-strand binding family protein.
  
    0.812
CSCA_1331
Phospholipase C zinc-binding protein.
       0.713
CSCA_1330
Hypothetical protein.
       0.656
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.579
CSCA_1329
Hypothetical protein.
       0.517
CSCA_4870
Coproporphyrinogen dehydrogenase.
 
  
 0.511
CSCA_1327
Stage V sporulation protein B.
       0.481
CSCA_3710
Protein of unknown function DUF6 transmembrane.
   
    0.457
CSCA_1040
Hypothetical protein.
   
    0.431
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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