Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_1349Peptidase M56, BlaR1. (633 aa)    
Predicted Functional Partners:
CSCA_1348
CopY family transcriptional regulator.
 
 
 0.987
CSCA_1703
Transcriptional repressor, CopY family.
 
 
 0.946
CSCA_2332
Penicillinase repressor.
 
 
 0.946
CSCA_2545
Transcriptional regulator.
 
 
 0.946
CSCA_1745
Transcriptional repressor, CopY family.
 
 
 0.944
CSCA_1347
Hypothetical protein.
       0.440
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.427
CSCA_1351
Putative DNA-directed RNA polymerase, omega subunit.
       0.427
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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