Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1373Phage regulatory protein. (260 aa)    
Predicted Functional Partners:
CSCA_1372
Hypothetical protein.
       0.773
CSCA_1374
Hypothetical protein.
       0.670
CSCA_1371
Hypothetical protein.
       0.618
CSCA_3830
RNA polymerase sigma-54 factor.
   
    0.492
CSCA_1370
Transcriptional regulator.
       0.479
CSCA_2407
Putative cell wall binding repeat 2-containing protein.
  
     0.431
CSCA_0081
Primosome, DnaD subunit.
 
   
 0.414
CSCA_0753
Primosome, DnaD subunit.
 
   
 0.412
CSCA_3722
Putative cell wall binding repeat 2-containing protein.
  
     0.411
CSCA_2722
SPP1 family phage portal protein.
  
     0.405
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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