Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1396Phage integrase. (233 aa)    
Predicted Functional Partners:
CSCA_1397
Hypothetical protein.
       0.773
CSCA_1392
Integrase/recombinase (XerC/CodV family).
     0.758
CSCA_1398
Hypothetical protein.
       0.623
CSCA_1395
Hypothetical protein.
       0.590
CSCA_4236
Spore cortex biosynthesis protein YabQ.
  
     0.552
CSCA_1394
Hypothetical protein.
       0.505
CSCA_4203
Transcriptional regulator, XRE family.
 
  
 0.483
CSCA_3899
Hypothetical protein.
   
    0.482
CSCA_1393
Hypothetical protein.
       0.476
CSCA_2181
Multi-sensor signal transduction histidine kinase.
  
  
 0.464
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.