Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1424Phage-like element pbsx protein XkdK. (361 aa)    
Predicted Functional Partners:
CSCA_1435
Phage-like element pbsx protein XkdT.
 
 
 0.982
CSCA_1425
Phage-like element pbsx protein xkdM.
 
 
   0.978
CSCA_2704
XkdU related phage protein.
 
 
 0.978
CSCA_1433
Hypothetical protein.
 
 
 0.975
CSCA_2706
Hypothetical protein.
 
 
 0.970
CSCA_1430
Hypothetical protein.
 
 
 0.964
CSCA_1434
Baseplate J family protein.
 
 
 0.964
CSCA_1423
Phage protein.
 
 
   0.962
CSCA_2705
Baseplate J family protein.
 
 
 0.956
CSCA_2707
Hypothetical protein.
 
 
 0.953
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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