Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1455Integrase family protein; Belongs to the 'phage' integrase family. (330 aa)    
Predicted Functional Partners:
CSCA_1456
Hypothetical protein.
       0.785
CSCA_1392
Integrase/recombinase (XerC/CodV family).
  
     0.665
CSCA_0073
Protein of unknown function DUF214.
  
    0.640
CSCA_2675
Permease.
   
    0.608
CSCA_2768
Cell division FtsK/SpoIIIE.
 
   
 0.600
CSCA_3270
Hypothetical protein.
   
    0.583
CSCA_3899
Hypothetical protein.
  
    0.553
CSCA_4417
DNA polymerase III, alpha subunit.
 
  
 0.515
murD
UDP-N-acetylmuramoylalanine/D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.464
CSCA_1662
Prephenate dehydrogenase.
  
    0.444
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.