Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CSCA_1467Dihydroxyacetone kinase, L subunit. (214 aa)    
Predicted Functional Partners:
CSCA_1466
Dihydroxyacetone kinase, phosphotransfer subunit.
 
 0.999
CSCA_1468
Dihydroxyacetone kinase, DhaK subunit.
 
 0.999
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.818
CSCA_0837
Oxidoreductase.
    
  0.811
CSCA_4557
FAD dependent oxidoreductase.
    
  0.811
CSCA_3217
PAS domain S-box domain-containing protein.
   
 
 0.464
CSCA_2039
Sigma54 specific transcriptional regulator, Fis family.
   
 
 0.463
CSCA_2267
ATPase AAA.
   
 
 0.463
CSCA_2952
GAF modulated sigma54 specific transcriptional regulator, Fis family.
   
 
 0.463
CSCA_4951
Sigma54 specific transcriptional regulator, Fis family.
   
 
 0.463
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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