Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1534Membrane protein, putative. (578 aa)    
Predicted Functional Partners:
CSCA_1244
Hypothetical protein.
  
     0.650
CSCA_1533
Protein of unknown function DUF161.
       0.513
CSCA_4648
Abortive infection protein.
 
     0.488
CSCA_0763
Hypothetical protein.
  
     0.477
CSCA_1535
Asparagine synthase (glutamine-hydrolyzing).
     
 0.472
CSCA_1066
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
 
     0.447
CSCA_3160
Ig domain protein.
  
     0.446
CSCA_4409
Membrane-bound metal-dependent hydrolase.
  
     0.438
CSCA_5165
Putative cell wall binding repeat 2-containing protein.
  
     0.431
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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