Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1553Extracellular ligand-binding receptor. (395 aa)    
Predicted Functional Partners:
CSCA_3707
Hypothetical protein.
  
  
 0.837
CSCA_3711
Hypothetical protein.
  
  
 0.837
CSCA_0845
Response regulator receiver and ANTAR domain protein.
  
 
 0.750
CSCA_1626
Ethanolamine utilization response regulator.
  
 
 0.750
CSCA_1760
Multi-sensor hybrid histidine kinase.
     
 0.569
CSCA_2644
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.523
CSCA_4803
Class II glutamine amidotransferase.
     
 0.502
CSCA_1556
Cobalt transport protein.
     
 0.500
CSCA_3574
PAS domain S-box domain-containing protein.
     
 0.500
CSCA_1554
ABC transporter related protein.
       0.465
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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