Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1586NADPH-dependent FMN reductase. (232 aa)    
Predicted Functional Partners:
CSCA_1585
Hypothetical protein.
       0.774
CSCA_0062
NADPH-dependent FMN reductase.
  
     0.753
CSCA_1584
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase related protein; Belongs to the UPF0255 family.
       0.691
CSCA_1587
Transcriptional regulator, PadR-like family.
       0.620
CSCA_1588
Transcriptional regulator, PadR-like family.
       0.585
CSCA_2567
Nitroreductase.
  
  
 0.518
CSCA_2375
Nitroreductase.
  
  
 0.468
CSCA_0098
Nitroreductase.
 
  
 0.446
CSCA_1757
Flavoredoxin.
 
     0.429
CSCA_1583
Hypothetical protein.
       0.417
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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