Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1597Peptide ABC transporter permease. (310 aa)    
Predicted Functional Partners:
CSCA_1596
Oligopeptide/dipeptide ABC transporter, permease protein.
 0.999
CSCA_1595
Oligopeptide/dipeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.998
CSCA_1594
Peptide ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 0.997
CSCA_1598
Hypothetical protein.
 
 0.994
CSCA_4743
4-phytase.
 
 0.994
CSCA_4617
Extracellular solute-binding protein family 5.
 
 0.992
CSCA_0521
Peptide ABC transporter permease.
 
 0.956
CSCA_0535
Binding-protein-dependent transport systems inner membrane component.
 
 0.955
CSCA_0515
Peptide ABC transporter permease.
 
 0.954
CSCA_0518
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.943
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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