Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CSCA_1650Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (269 aa)    
Predicted Functional Partners:
CSCA_1646
Major facilitator superfamily MFS_1.
 
    0.800
CSCA_1649
Xylose isomerase domain protein TIM barrel.
 
     0.735
CSCA_1699
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.718
CSCA_1792
Hypothetical protein; Belongs to the LysR transcriptional regulatory family.
  
     0.701
CSCA_5022
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.697
CSCA_1154
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.687
aroE-3
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.681
CSCA_0808
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.658
aroE-2
Hypothetical protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.647
aroE-4
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.646
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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