STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSCA_1745Transcriptional repressor, CopY family. (120 aa)    
Predicted Functional Partners:
CSCA_1744
Peptidase M56 BlaR1.
 
 
 0.990
CSCA_2546
Hypothetical protein.
 
 
 0.949
CSCA_2333
Putative beta-lactamase-inducing penicillin-binding protein.
 
 
 0.947
CSCA_1349
Peptidase M56, BlaR1.
 
 
 0.944
CSCA_1702
Peptidase M56 BlaR1.
 
 
 0.944
CSCA_0131
Cadmium-translocating P-type ATPase.
  
  
 0.591
CSCA_1047
Copper-translocating P-type ATPase.
  
  
 0.591
CSCA_1065
Heavy metal transporter.
  
  
 0.521
CSCA_1746
Flavodoxin.
       0.487
CSCA_1048
Copper ion binding protein.
  
  
 0.433
Your Current Organism:
Clostridium scatologenes
NCBI taxonomy Id: 1548
Other names: ATCC 25775, Bacillus scatologenes, C. scatologenes, CCUG 9283, Clostridium scatol, DSM 757, NCIB 8855, NCIB:8855, NCTC 12992
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.